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Part I. Introduction: Cell Mechanisms and Cell Biology: 1. A different kind of science; 2. The organization of science into disciplines; 3. The new discipline of cell biology; Part II. Explaining Cellular Phenomena through Mechanisms: 4. Historical conceptions of mechanism; 5. Twentieth century conceptions of mechanism; 6. Current conceptions of mechanisms; 7. Representing and reasoning about mechanisms; 8. Levels of organization and reduction; 9. Organization: from Cartesian to biological mechanisms; 10. Discovering and testing models of mechanisms; 11. Conclusions; Part III. The Locus of Cell Mechanisms: Terra Incognita Between Cytology and Biochemistry: 12. Cytological contributions to discovering cell mechanisms up to 1940; 13. Biochemical contributions to discovering cell mechanisms up to 1940; 14. The need to enter the Terra Incognita between cytology and biochemistry; Part IV. Creating New Instruments and Research Techniques to Study Cell Mechanisms: 15. The epistemology of evidence: judging artifacts; 16. The ultracentrifuge and cell fractionation; 17. The electron microscope and electron microscopy; 18. A case study of an artifact charge; 19. Equipped with new instruments and techniques to enter Terra Incognita; Part V. Entering the Terra Incognita Between Biochemistry and Cytology: 20. First steps towards cell biology at the Rockefeller Institute: Claude’s introduction of cell fractionation; 21. Robert Bensley: an alternative approach to fractionalism; 22. Competing interpretations of fractions from normal cells; 23. Linking Claude’s microsomes to protein synthesis; 24. Adding a biochemical perspective to the Rockefeller Laboratory; 25. Adding electron microscopy as a tool; 26. The state of cell studies at the end of the 1940’s; Part VI. New Knowledge: the Mechanisms of the Cytoplasm: 27. The mitochondrion; 28. Microsomes, the endoplasmic reticulum, and ribosomes; 29. Two additional organelles; 30. Giving cell biology an institutional identity.

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